CIDECP1 CIDEC pseudogene 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: CIDECP1provided by HGNC
Official Full Name: CIDEC pseudogene 1provided by HGNC
Primary source: HGNC:HGNC:24230
See related: Ensembl:ENSG00000186162 AllianceGenome:HGNC:24230
Gene type: pseudo
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CICE; CIDECP
Expression: Ubiquitous expression in bone marrow (RPKM 9.3), brain (RPKM 7.9) and 25 other tissues See more
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Genomic context

Location:: 3p25.3

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	3	NC_000003.12 (10017553..10026136, complement)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	3	NC_060927.1 (10009553..10018134, complement)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	3	NC_000003.11 (10059237..10067820, complement)

Chromosome 3 - NC_000003.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

L18506 (e-PCR)
- UniSTS:54024

GDB:314949 (e-PCR)
- UniSTS:156503

D13S1553 (e-PCR)
- UniSTS:473482

D3S2947E (e-PCR)
- UniSTS:150931

SHGC-76726 (e-PCR)
- UniSTS:12948

SHGC-76695 (e-PCR)
- UniSTS:21451

WI-11598 (e-PCR)
- UniSTS:30670

A004X28 (e-PCR)
- UniSTS:35574

SHGC-76700 (e-PCR)
- UniSTS:5881

Other Names

cell death inducing DFFA like effector c pseudogene 1
cell death-inducing CIDE-like effector pseudogene
cell death-inducing DFFA-like effector c pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.