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    SNORD82 small nucleolar RNA, C/D box 82 [ Homo sapiens (human) ]

    Gene ID: 25826, updated on 2-Nov-2024

    Summary

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    Official Symbol
    SNORD82provided by HGNC
    Official Full Name
    small nucleolar RNA, C/D box 82provided by HGNC
    Primary source
    HGNC:HGNC:10240
    See related
    Ensembl:ENSG00000202400 MIM:611133; AllianceGenome:HGNC:10240
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    U82; Z25; RNU82
    Summary
    The majority of small nucleolar RNAs (snoRNAs) function as guide RNAs in the nucleotide modification of preribosomal RNA (pre-rRNA). C/D box snoRNAs, like SNORD82, are involved in site-specific 2-prime-O-ribose methylation of pre-rRNA (Rebane and Metspalu, 1999 [PubMed 10524220]).[supplied by OMIM, Mar 2008]
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    Genomic context

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    See SNORD82 in Genome Data Viewer
    Location:
    2q37.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (231460368..231460442, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (231944807..231944881, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (232325079..232325153, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, H/ACA box 75 Neighboring gene nucleolin Neighboring gene small nucleolar RNA, C/D box 20 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:232328263-232328934 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:232328935-232329604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17287 Neighboring gene NANOG hESC enhancer GRCh37_chr2:232340658-232341163 Neighboring gene uncharacterized LOC107985998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:232345298-232345810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:232345811-232346321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17289 Neighboring gene RNA, U2 small nuclear 22, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. U82, a novel snoRNA identified from the fifth intron of human and mouse nucleolin gene. Rebane A, et al. Biochim Biophys Acta, 1999 Sep 3. PMID 10524220
    2. Genomic organization and chromosomal localization of the human nucleolin gene. Srivastava M, et al. J Biol Chem, 1990 Sep 5. PMID 2394707
    3. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. Duga S, et al. Biochim Biophys Acta, 2000 Feb 29. PMID 10684968
    4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RNA, U82 small nucleolar

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_004398.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AJ010666
      Related
      ENST00000365530.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      231460368..231460442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      231944807..231944881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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