U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Msantd2 Myb/SANT-like DNA-binding domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 235184, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Msantd2provided by MGI
    Official Full Name
    Myb/SANT-like DNA-binding domain containing 2provided by MGI
    Primary source
    MGI:MGI:2384579
    See related
    Ensembl:ENSMUSG00000042138 AllianceGenome:MGI:2384579
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2810450G17Rik; 9530092B10Rik
    Summary
    Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 5.8), CNS E14 (RPKM 5.1) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Msantd2 in Genome Data Viewer
    Location:
    9 A4; 9 20.77 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (37397034..37437409)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (37487532..37526113)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_23805 Neighboring gene roundabout guidance receptor 4 Neighboring gene STARR-positive B cell enhancer ABC_E5061 Neighboring gene roundabout guidance receptor 3 Neighboring gene STARR-seq mESC enhancer starr_23807 Neighboring gene STARR-seq mESC enhancer starr_23808 Neighboring gene STARR-seq mESC enhancer starr_23809 Neighboring gene STARR-seq mESC enhancer starr_23812 Neighboring gene endothelial cell-specific adhesion molecule Neighboring gene V-set and immunoglobulin domain containing 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. Bulfone A, et al. J Neurosci, 2005 Aug 17. PMID 16107646, Free PMC Article
    2. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    3. Proximity-dependent biotin identification (BioID) reveals a dynamic LSD1-CoREST interactome during embryonic stem cell differentiation. Barnes CE, et al. Mol Omics, 2022 Jan 17. PMID 34709266, Free PMC Article
    4. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    5. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC37388

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146222.3 → NP_666334.2  myb/SANT-like DNA-binding domain-containing protein 2

      See identical proteins and their annotated locations for NP_666334.2

      Status: VALIDATED

      Source sequence(s)
      AC105958
      Consensus CDS
      CCDS22978.1
      UniProtKB/Swiss-Prot
      Q6NZR2, Q8R3V3
      UniProtKB/TrEMBL
      A0A6I8MWX7
      Related
      ENSMUSP00000043329.7, ENSMUST00000048604.8
      Conserved Domains (1) summary
      pfam13837
      Location:104 → 195
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      37397034..37437409
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510230.5 → XP_006510293.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A6I8MWX7
      Conserved Domains (1) summary
      pfam13837
      Location:192 → 260
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_036154882.1 → XP_036010775.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X4

      Conserved Domains (1) summary
      pfam13837
      Location:192 → 267
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    3. XM_017313314.3 → XP_017168803.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X2

      Conserved Domains (1) summary
      pfam13837
      Location:107 → 202
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    4. XM_030244294.2 → XP_030100154.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A1B0GT46
      Related
      ENSMUSP00000148195.2, ENSMUST00000211060.2

    5. XM_036154881.1 → XP_036010774.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A1B0GT46

    6. XM_006510232.5 → XP_006510295.1  myb/SANT-like DNA-binding domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006510295.1

      UniProtKB/TrEMBL
      A0A1B0GT46

    RNA

    1. XR_003947871.2 RNA Sequence

    2. XR_003947869.2 RNA Sequence

    3. XR_004935401.1 RNA Sequence

    4. XR_004935400.1 RNA Sequence

    5. XR_001778867.3 RNA Sequence

    6. XR_003947872.2 RNA Sequence

    7. XR_004935402.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NZR2.1 GenPept UniProtKB/Swiss-Prot:Q6NZR2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools