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    Antxr1 anthrax toxin receptor 1 [ Mus musculus (house mouse) ]

    Gene ID: 69538, updated on 28-Oct-2024

    Summary

    Official Symbol
    Antxr1provided by MGI
    Official Full Name
    anthrax toxin receptor 1provided by MGI
    Primary source
    MGI:MGI:1916788
    See related
    Ensembl:ENSMUSG00000033420 AllianceGenome:MGI:1916788
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tem8; Antrx1; 2310008J16Rik; 2810405N18Rik
    Summary
    Predicted to enable actin filament binding activity; collagen binding activity; and transmembrane signaling receptor activity. Acts upstream of or within blood vessel development; negative regulation of extracellular matrix assembly; and positive regulation of metallopeptidase activity. Predicted to be located in external side of plasma membrane; filopodium membrane; and lamellipodium membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in several structures, including brain; chondrocranium; costal cartilage; immune system; and liver. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in limb E14.5 (RPKM 23.9), bladder adult (RPKM 13.0) and 20 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Antxr1 in Genome Data Viewer
    Location:
    6 D1; 6 37.94 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87110835..87312757, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87133853..87335809, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene DNA segment, Chr 6, ERATO Doi 527, expressed Neighboring gene STARR-positive B cell enhancer mm9_chr6:87069488-87069789 Neighboring gene predicted gene, 53292 Neighboring gene STARR-positive B cell enhancer ABC_E4842 Neighboring gene STARR-seq mESC enhancer starr_16552 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87178031-87178232 Neighboring gene predicted gene, 38851 Neighboring gene STARR-seq mESC enhancer starr_16554 Neighboring gene predicted gene, 34170 Neighboring gene predicted gene, 34090 Neighboring gene gastrokine 1 Neighboring gene gastrokine 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables actin filament binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables actin filament binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables collagen binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables collagen binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables transmembrane signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transmembrane signaling receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transmembrane signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in external side of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in filopodium membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in filopodium membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in lamellipodium membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lamellipodium membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    anthrax toxin receptor 1
    Names
    tumor endothelial marker 8

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_054041.2NP_473382.1  anthrax toxin receptor 1 precursor

      See identical proteins and their annotated locations for NP_473382.1

      Status: VALIDATED

      Source sequence(s)
      BB649806, BC094544
      Consensus CDS
      CCDS20318.1
      UniProtKB/Swiss-Prot
      Q505H2, Q9CZ52
      UniProtKB/TrEMBL
      A0A0N4SV16
      Related
      ENSMUSP00000045634.10, ENSMUST00000042025.12
      Conserved Domains (3) summary
      cd01474
      Location:37221
      vWA_ATR; ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ...
      pfam05586
      Location:394486
      Ant_C; Anthrax receptor C-terminus region
      pfam05587
      Location:223317
      Anth_Ig; Anthrax receptor extracellular domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      87110835..87312757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)