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    6330409D20Rik RIKEN cDNA 6330409D20 gene [ Mus musculus (house mouse) ]

    Gene ID: 70730, updated on 22-Oct-2024

    Summary

    Official Symbol
    6330409D20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 6330409D20 geneprovided by MGI
    Primary source
    MGI:MGI:1917980
    See related
    Ensembl:ENSMUSG00000009551 AllianceGenome:MGI:1917980
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in cerebellum adult (RPKM 1.5), whole brain E14.5 (RPKM 1.4) and 22 other tissues See more
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    Genomic context

    See 6330409D20Rik in Genome Data Viewer
    Location:
    2 B; 2 22.09 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (32622632..32632419, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (32732620..32741016, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8785 Neighboring gene cyclin dependent kinase 9 Neighboring gene STARR-positive B cell enhancer ABC_E7807 Neighboring gene microRNA 3960 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:32577778-32577887 Neighboring gene predicted gene, 33457 Neighboring gene STARR-positive B cell enhancer ABC_E3368 Neighboring gene SH2 domain containing 3C Neighboring gene STARR-positive B cell enhancer ABC_E411 Neighboring gene tetratricopeptide repeat domain 16 Neighboring gene torsin family 2, member A Neighboring gene STARR-positive B cell enhancer ABC_E10097 Neighboring gene cilia and flagella associated protein 157 Neighboring gene peptidyl-tRNA hydrolase 1 homolog

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_177960.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL772271
      Related
      ENSMUST00000370808.1
    2. NR_177961.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL772271
      Related
      ENSMUST00000370809.1
    3. NR_177962.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL772271
      Related
      ENSMUST00000009695.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      32622632..32632419 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_027529.1: Suppressed sequence

      Description
      NM_027529.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.