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    Cfap92 cilia and flagella associated protein 92 [ Mus musculus (house mouse) ]

    Gene ID: 613264, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Cfap92provided by MGI
    Official Full Name
    cilia and flagella associated protein 92provided by MGI
    Primary source
    MGI:MGI:3586838
    See related
    Ensembl:ENSMUSG00000089997 AllianceGenome:MGI:3586838
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810020O05Rik
    Summary
    Is expressed in brain; choroid plexus; nasal cavity epithelium; nasopharynx; and spinal cord. Orthologous to human CFAP92 (cilia and flagella associated protein 92 (putative)). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in testis adult (RPKM 5.8), bladder adult (RPKM 3.3) and 7 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Cfap92 in Genome Data Viewer
    Location:
    6 D1; 6 38.75 cM
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87652572..87709717, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87675590..87722747, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene aprataxin and PNKP like factor Neighboring gene predicted gene, 38852 Neighboring gene predicted gene, 44097 Neighboring gene STARR-positive B cell enhancer ABC_E9276 Neighboring gene RIKEN cDNA E230015B07 gene Neighboring gene STARR-positive B cell enhancer ABC_E1067 Neighboring gene STARR-seq mESC enhancer starr_16564 Neighboring gene STARR-positive B cell enhancer ABC_E9277 Neighboring gene EF hand and coiled-coil domain containing 1 Neighboring gene predicted gene, 34414 Neighboring gene 60S ribosomal protein L3 related

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identifying new candidate genes for hereditary facial paresis on chromosome 3q21-q22 by RNA in situ hybridization in mouse. van der Zwaag B, et al. Genomics, 2005 Jul. PMID 15953540
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein CFAP92

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001384219.1 → NP_001371148.1  uncharacterized protein CFAP92

      Status: VALIDATED

      Source sequence(s)
      AC158626
      UniProtKB/TrEMBL
      A0A571BDQ7
      Related
      ENSMUSP00000158817.2, ENSMUST00000238521.2
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    RNA

    1. NR_045482.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC158626

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      87652572..87709717 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036152255.1 → XP_036008148.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    2. XM_036152254.1 → XP_036008147.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    3. XM_036152251.1 → XP_036008144.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    4. XM_036152253.1 → XP_036008146.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    5. XM_036152257.1 → XP_036008150.1  uncharacterized protein CFAP92 isoform X2

      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    6. XM_036152252.1 → XP_036008145.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    7. XM_036152256.1 → XP_036008149.1  uncharacterized protein CFAP92 isoform X1

      UniProtKB/TrEMBL
      A0A571BDQ7
      Conserved Domains (1) summary
      pfam15084
      Location:109 → 203
      DUF4550; Domain of unknown function (DUF4550)

    RNA

    1. XR_004933614.1 RNA Sequence

    2. XR_004933613.1 RNA Sequence

    3. XR_004933615.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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