U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC101928438 uncharacterized LOC101928438 [ Homo sapiens (human) ]

    Gene ID: 101928438, updated on 22-Oct-2024

    Summary

    Gene symbol
    LOC101928438
    Gene description
    uncharacterized LOC101928438
    See related
    Ensembl:ENSG00000271086
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.7) and thyroid (RPKM 0.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC101928438 in Genome Data Viewer
    Location:
    9q22.33-q31.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (99585786..99819889, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (111757449..111991524, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (102348068..102582171, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902236 Neighboring gene uncharacterized LOC124902233 Neighboring gene uncharacterized LOC107987012 Neighboring gene uncharacterized LOC124902234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102431793-102432372 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:102437510-102438010 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28715 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581295-102581888 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:102581889-102582482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:102584885-102585397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20130 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:102595258-102596457 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20131 Neighboring gene STX17 divergent transcript

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109802.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK057451, AL138835
      Related
      ENST00000427039.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      99585786..99819889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      111757449..111991524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)