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    NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest [ Homo sapiens (human) ]

    Gene ID: 100996569, updated on 28-Oct-2024

    Summary

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    Official Symbol
    NAMAprovided by HGNC
    Official Full Name
    non-protein coding RNA, associated with MAP kinase pathway and growth arrestprovided by HGNC
    Primary source
    HGNC:HGNC:42408
    See related
    Ensembl:ENSG00000271086 MIM:620412; AllianceGenome:HGNC:42408
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    STX17-DT; STX17-AS1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See NAMA in Genome Data Viewer
    Location:
    9q22.33
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (99355340..99375257, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (111526995..111546881, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (102117622..102137539, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28707 Neighboring gene uncharacterized LOC124902231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:102068645-102069144 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28708 Neighboring gene keratin 8 pseudogene 11 Neighboring gene uncharacterized LOC124902232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:102131371-102131952 Neighboring gene uncharacterized LOC107987011 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:102181342-102182541 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:102195429-102196628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28713 Neighboring gene uncharacterized LOC124902236 Neighboring gene uncharacterized LOC124902233

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest. Yoon H, et al. Int J Cancer, 2007 Aug 15. PMID 17415708
    2. Downregulation of LOC441461 Promotes Cell Growth and Motility in Human Gastric Cancer. Lee SS, et al. Cancers (Basel), 2022 Feb 23. PMID 35267457, Free PMC Article
    3. BRAF-Activated Long Noncoding RNA Modulates Papillary Thyroid Carcinoma Cell Proliferation through Regulating Thyroid Stimulating Hormone Receptor. Zheng H, et al. Cancer Res Treat, 2016 Apr. PMID 26323637, Free PMC Article
    4. Genetics of callous-unemotional behavior in children. Viding E, et al. PLoS One, 2013. PMID 23874384, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genetics of callous-unemotional behavior in children.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • STX17 antisense RNA 1
    • STX17 divergent transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_102270.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      DQ673922, DQ673923, DQ673925, DQ673929, DQ673950, DQ673963
      Related
      ENST00000604258.6

    2. NR_102271.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks four internal exons, compared to variant 1.
      Source sequence(s)
      DQ673923, DQ673929, DQ673950, DQ673963

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      99355340..99375257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      111526995..111546881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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