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    D6Ertd527e DNA segment, Chr 6, ERATO Doi 527, expressed [ Mus musculus (house mouse) ]

    Gene ID: 52372, updated on 17-Aug-2024

    Summary

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    Official Symbol
    D6Ertd527eprovided by MGI
    Official Full Name
    DNA segment, Chr 6, ERATO Doi 527, expressedprovided by MGI
    Primary source
    MGI:MGI:1261919
    See related
    Ensembl:ENSMUSG00000090891 AllianceGenome:MGI:1261919
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in ovary adult (RPKM 4.0) and testis adult (RPKM 0.4) See more
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    Genomic context

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    See D6Ertd527e in Genome Data Viewer
    Location:
    6 D1; 6 37.9 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87081729..87089979)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87097125..87113003)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16547 Neighboring gene glutamine fructose-6-phosphate transaminase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87025148-87025378 Neighboring gene predicted gene, 52909 Neighboring gene STARR-positive B cell enhancer mm9_chr6:87069488-87069789 Neighboring gene predicted gene, 53292 Neighboring gene STARR-positive B cell enhancer ABC_E4842 Neighboring gene anthrax toxin receptor 1 Neighboring gene STARR-seq mESC enhancer starr_16552 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87178031-87178232 Neighboring gene predicted gene, 38851

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. De novo emergence, existence, and demise of a protein-coding gene in murids. Petrzilek J, et al. BMC Biol, 2022 Dec 8. PMID 36482406, Free PMC Article
    2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_176826.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162465
      Related
      ENSMUST00000204927.2

    2. NR_176827.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC162465
      Related
      ENSMUST00000170124.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      87081729..87089979
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001167937.1: Suppressed sequence

      Description
      NM_001167937.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.

    2. NM_001167938.1: Suppressed sequence

      Description
      NM_001167938.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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