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    ydeD putative permease [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 939906, updated on 6-Oct-2023

    Summary

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    Gene symbol
    ydeD
    Gene description
    putative permease
    Locus tag
    BSU_05160
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU05160
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    Genomic context

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    Sequence:
    NC_000964.3 (562502..563461)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative permease Neighboring gene putative transcriptional regulator (AraC/XylS family) Neighboring gene putative transcriptional regulator (AraC/XylS family) Neighboring gene putative PLP-dependent transcriptional regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
    4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative permease
    NP_388397.1
    • Evidence 3: Putative function from multiple computational evidences; PubMedId: 15849754, 16850406; Product type t: transporter

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_388397.1 putative permease [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_388397.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D1L4T1
      Conserved Domains (1) summary
      COG0697
      Location:2 → 300
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P96661.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases