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    yobO putative phage-related pre-neck appendage protein; defective prophage 6 [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 939627, updated on 12-Feb-2021

    Summary

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    Gene symbol
    yobO
    Gene description
    putative phage-related pre-neck appendage protein; defective prophage 6
    Locus tag
    BSU_19030
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU19030
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    Genomic context

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    Sequence:
    NC_000964.3 (2076206..2078626)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene putative phage protein; putative defective prophage 6 Neighboring gene putative amine oxidase (flavoprotein) Neighboring gene miscRNA Neighboring gene molecular chaperone for secreting proteins

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    2. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746
    3. From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. Barbe V, et al. Microbiology (Reading), 2009 Jun. PMID 19383706, Free PMC Article
    4. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Kunst F, et al. Nature, 1997 Nov 20. PMID 9384377

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative phage-related pre-neck appendage protein; defective prophage 6
    NP_389784.1
    • Evidence 3: Putative function from multiple computational evidences; PubMedId: 11562162, 19450535; Product type h: extrachromosomal origin

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_389784.1 putative phage-related pre-neck appendage protein; defective prophage 6 [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_389784.1

      Status: PROVISIONAL

      Conserved Domains (2) summary
      pfam11962
      Location:592 → 806
      Peptidase_G2; IMC autoproteolytic cleavage domain
      pfam12708
      Location:82 → 303
      Pectate_lyase_3; Pectate lyase superfamily protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O34433.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases