U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    liaR two-component response regulator [YvqE] responding to cell wall stress [ Bacillus subtilis subsp. subtilis str. 168 ]

    Gene ID: 935957, updated on 4-Feb-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    liaR
    Gene description
    two-component response regulator [YvqE] responding to cell wall stress
    Locus tag
    BSU_33080
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. subtilis str. 168 (strain: 168, sub-species: subtilis, type-material: type strain of Bacillus subtilis)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Old locus tag
    BSU33080
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000964.3 (3394422..3395057, complement)

    NC_000964.3Genomic Context describing neighboring genes Neighboring gene component of the GerA germination receptor Neighboring gene component of the germination receptor GerA; putative transporter Neighboring gene component of the germination receptor GerA Neighboring gene two-component sensor histidine kinase [LiaR(YvqC)] sensing cell wall stress Neighboring gene membrane component associated to the LiaRS two-component system Neighboring gene sensor of antibiotic stress on the cell wall

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000964.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Low phosphatase activity of LiaS and strong LiaR-DNA affinity explain the unusual LiaS to LiaR in vivo stoichiometry. Jani S, et al. BMC Microbiol, 2020 Apr 29. PMID 32349670, Free PMC Article
    2. In-depth profiling of the LiaR response of Bacillus subtilis. Wolf D, et al. J Bacteriol, 2010 Sep. PMID 20639339, Free PMC Article
    3. Stoichiometry and perturbation studies of the LiaFSR system of Bacillus subtilis. Schrecke K, et al. Mol Microbiol, 2013 Feb. PMID 23279150
    4. Bacillus subtilis, the model Gram-positive bacterium: 20 years of annotation refinement. Borriss R, et al. Microb Biotechnol, 2018 Jan. PMID 29280348, Free PMC Article
    5. An updated metabolic view of the Bacillus subtilis 168 genome. Belda E, et al. Microbiology (Reading), 2013 Apr. PMID 23429746

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Low phosphatase activity of LiaS and strong LiaR-DNA affinity explain the unusual LiaS to LiaR in vivo stoichiometry.
      Title: Low phosphatase activity of LiaS and strong LiaR-DNA affinity explain the unusual LiaS to LiaR in vivo stoichiometry.
    2. Transcription and translation initiation combined indicate a LiaF:LiaS:LiaR ratio of 18:4:1.
      Title: Stoichiometry and perturbation studies of the LiaFSR system of Bacillus subtilis.
    3. Data suggest that the LiaFSR system of B. subtilis and, presumably, other Firmicutes bacilli coordinates a phage shock protein-like response.
      Title: In-depth profiling of the LiaR response of Bacillus subtilis.
    Submit: New GeneRIF Correction

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    two-component response regulator [YvqE] responding to cell wall stress
    NP_391188.1
    • Evidence 1a: Function from experimental evidences in the studied strain; PubMedId: 11717295, 15273097, 16816187, 17660417, 17921301, 23279150, 23326432, 24666271; Product type r: regulator

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000964.3 Reference assembly

      Range
      3394422..3395057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_391188.1 two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168]

      See identical proteins and their annotated locations for NP_391188.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D4G191
      Conserved Domains (1) summary
      COG2197
      Location:2 → 211
      CitB; DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O32197.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases