Slc25a42 solute carrier family 25, member 42 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slc25a42provided by RGD
Official Full Name: solute carrier family 25, member 42provided by RGD
Primary source: RGD:1592346
See related: EnsemblRapid:ENSRNOG00000020345 AllianceGenome:RGD:1592346
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable adenine nucleotide transmembrane transporter activity and adenosine-diphosphatase activity. Predicted to be involved in adenine nucleotide transport. Predicted to be located in mitochondrion. Orthologous to human SLC25A42 (solute carrier family 25 member 42). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Heart (RPKM 119.2), Muscle (RPKM 88.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 16p14

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	16	NC_086034.1 (19247874..19286598)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	16	NC_051351.1 (19213914..19251990)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	16	NC_005115.4 (20962144..21000191)

Chromosome 16 - NC_086034.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ADP phosphatase activity	IEA Inferred from Electronic Annotation more info
enables ADP phosphatase activity	ISO Inferred from Sequence Orthology more info
enables ADP phosphatase activity	ISS Inferred from Sequence or Structural Similarity more info
enables ADP transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables ADP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables ADP transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables AMP transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables AMP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables AMP transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables ATP transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables ATP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables ATP transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables coenzyme A transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables coenzyme A transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables coenzyme A transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in ADP transport	IEA Inferred from Electronic Annotation more info
involved_in ADP transport	ISO Inferred from Sequence Orthology more info
involved_in ADP transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in AMP transport	IEA Inferred from Electronic Annotation more info
involved_in AMP transport	ISO Inferred from Sequence Orthology more info
involved_in AMP transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in ATP transport	IEA Inferred from Electronic Annotation more info
involved_in ATP transport	ISO Inferred from Sequence Orthology more info
involved_in ATP transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in coenzyme A transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in coenzyme A transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in coenzyme A transmembrane transport	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in mitochondrion	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: mitochondrial coenzyme A transporter SLC25A42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001127590.1 → NP_001121062.1 mitochondrial coenzyme A transporter SLC25A42

See identical proteins and their annotated locations for NP_001121062.1

Status: PROVISIONAL

Source sequence(s)

BC160887

UniProtKB/Swiss-Prot

P0C546

UniProtKB/TrEMBL

B1H271

Related

ENSRNOP00000106072.1, ENSRNOT00000171044.1

Conserved Domains (2) summary

PTZ00169
Location:34 → 295

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

pfam00153
Location:29 → 122

Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086034.1 Reference GRCr8

Range

19247874..19286598

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063275745.1 → XP_063131815.1 mitochondrial coenzyme A transporter SLC25A42 isoform X2
XM_063275744.1 → XP_063131814.1 mitochondrial coenzyme A transporter SLC25A42 isoform X1

UniProtKB/TrEMBL

A6KA79
XM_063275746.1 → XP_063131816.1 mitochondrial coenzyme A transporter SLC25A42 isoform X3