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    OPTC opticin [ Sus scrofa (pig) ]

    Gene ID: 397071, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OPTCprovided by VGNC
    Official Full Name
    opticinprovided by VGNC
    Primary source
    VGNC:VGNC:91056
    See related
    Ensembl:ENSSSCG00000015272
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See OPTC in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (64211477..64220982)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (70501760..70514591)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene fibromodulin Neighboring gene uncharacterized LOC106507842 Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene ATPase plasma membrane Ca2+ transporting 4 Neighboring gene lymphocyte transmembrane adaptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Protein localization in the human eye and genetic screen of opticin. Friedman JS, et al. Hum Mol Genet, 2002 May 15. PMID 12019215
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    opticin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214008.1 → NP_999173.1  opticin precursor

      See identical proteins and their annotated locations for NP_999173.1

      Status: PROVISIONAL

      Source sequence(s)
      AY077683
      UniProtKB/TrEMBL
      A0A4X1V4V4, A0A8D2CE22, Q8MIS4
      Related
      ENSSSCP00000016195.2, ENSSSCT00000016641.3
      Conserved Domains (3) summary
      sd00033
      Location:156 → 179
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:248 → 285
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:225 → 281
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      64211477..64220982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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