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    TMEM43 transmembrane protein 43 [ Sus scrofa (pig) ]

    Gene ID: 100515413, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TMEM43provided by VGNC
    Official Full Name
    transmembrane protein 43provided by VGNC
    Primary source
    VGNC:VGNC:99732
    See related
    Ensembl:ENSSSCG00000011603
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 45.6), lung (RPKM 45.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TMEM43 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (70397069..70417213, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (77795482..77875776, complement)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256290 Neighboring gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene XPC complex subunit, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC102158783 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4 Neighboring gene Wnt family member 7A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nuclear membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 43

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      70397069..70417213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021069380.1 → XP_020925039.1  transmembrane protein 43

      UniProtKB/TrEMBL
      A0A481D3P3, A0A4X1U6F2, A0A8D0K555, A0A8D0V1Y1
      Related
      ENSSSCP00000076105.1, ENSSSCT00000092186.1
      Conserved Domains (1) summary
      pfam07787
      Location:122 → 373
      TMEM43; Transmembrane protein 43
    Nucleotide Protein
    Heading Accession and Version

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