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    prf1 RNA polymerase II-associated Paf1 complex protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541123, updated on 18-Sep-2024

    Summary

    Official Symbol
    prf1
    Official Full Name
    RNA polymerase II-associated Paf1 complex protein
    Primary source
    PomBase:SPBC651.09c
    Locus tag
    SPOM_SPBC651.09C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    rtf1
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    Genomic context

    See prf1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (1255392..1257399, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase III complex large subunit Rpc1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Smc5-6 complex non-SMC subunit Nse5 Neighboring gene AP-3 adaptor complex subunit Apm3

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables RNA polymerase II C-terminal domain phosphoserine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables bubble DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus HDA PubMed 

    General protein information

    Preferred Names
    RNA polymerase II-associated Paf1 complex protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1255392..1257399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021417.3NP_595507.1  RNA polymerase II-associated Paf1 complex protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595507.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94667
      Conserved Domains (2) summary
      smart00719
      Location:214321
      Plus3; Short conserved domain in transcriptional regulators
      COG5296
      Location:1560
      COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]