U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PSMD7-DT PSMD7 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928035, updated on 17-Sep-2024

    Summary

    Official Symbol
    PSMD7-DTprovided by HGNC
    Official Full Name
    PSMD7 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53056
    See related
    Ensembl:ENSG00000261404 AllianceGenome:HGNC:53056
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PSMD7-DT in Genome Data Viewer
    Location:
    16q23.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (74192392..74215521, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (80010164..80033298, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (74226291..74249420, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984856 Neighboring gene Sharpr-MPRA regulatory region 11065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:74060166-74060769 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:74062668-74063546 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74103850-74104033 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7695 Neighboring gene uncharacterized LOC124903722 Neighboring gene MPRA-validated peak2636 silencer Neighboring gene peptidylprolyl isomerase A pseudogene 49 Neighboring gene H3K27ac hESC enhancers GRCh37_chr16:74329945-74330836 and GRCh37_chr16:74330837-74331726 Neighboring gene proteasome 26S subunit, non-ATPase 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104657.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC009120, BC043527
      Related
      ENST00000568137.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      74192392..74215521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      80010164..80033298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)