U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC653653 adaptor related protein complex 1 subunit sigma 2 pseudogene [ Homo sapiens (human) ]

    Gene ID: 653653, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC653653
    Gene description
    adaptor related protein complex 1 subunit sigma 2 pseudogene
    See related
    Ensembl:ENSG00000293358
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC653653 in Genome Data Viewer
    Location:
    17q23.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (60101760..60102919, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (60970715..60971874, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58179121..58180280, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene HEAT repeat containing 6 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 1 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8786 Neighboring gene HEATR6 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12524 Neighboring gene WAP four-disulfide core domain 21, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58190476-58191424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58191425-58192371 Neighboring gene uncharacterized LOC100996660 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12525 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58216417-58216950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58217485-58218018 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:58218675-58219231 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:58219938-58220447 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58232505-58233005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:58235149-58235978 Neighboring gene Sharpr-MPRA regulatory region 8996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12527 Neighboring gene carbonic anhydrase 4 Neighboring gene family with sequence similarity 106 member D, pseudogene

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027408.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025048
      Related
      ENST00000634326.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      60101760..60102919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      60970715..60971874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)