U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SPMIP1 sperm microtubule inner protein 1 [ Homo sapiens (human) ]

    Gene ID: 100130705, updated on 17-Sep-2024

    Summary

    Official Symbol
    SPMIP1provided by HGNC
    Official Full Name
    sperm microtubule inner protein 1provided by HGNC
    Primary source
    HGNC:HGNC:52392
    See related
    Ensembl:ENSG00000272899 AllianceGenome:HGNC:52392
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ATP6V1FNB
    Expression
    Broad expression in kidney (RPKM 1.9), small intestine (RPKM 1.8) and 22 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See SPMIP1 in Genome Data Viewer
    Location:
    7q32.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (128866330..128872047)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (130179257..130184974)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128506384..128512101)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene filamin C Neighboring gene FLNC antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128498247-128498747 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26605 Neighboring gene ATPase H+ transporting V1 subunit F Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18617 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18618 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18619 Neighboring gene Sharpr-MPRA regulatory region 1680 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26607 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128524773-128525372 Neighboring gene kielin cysteine rich BMP regulator Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128529996-128530586 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128530587-128531176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128531177-128531767 Neighboring gene uncharacterized LOC105375497 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:128532717-128533916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128543906-128544411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128544412-128544916 Neighboring gene filamin C pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    protein SPMIP1
    Names
    ATP6V1F neighbor gene protein
    protein ATP6V1FNB
    sperm associated microtubule inner protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195150.3NP_001182079.1  protein SPMIP1

      Status: VALIDATED

      Source sequence(s)
      AC025594, CK905566, H16831, HY047051, HY233643
      Consensus CDS
      CCDS83222.1
      UniProtKB/Swiss-Prot
      A0A1B0GUX0
      Related
      ENSP00000490280.1, ENST00000609480.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      128866330..128872047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      130179257..130184974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)