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    Wdr31 WD repeat domain 31 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298096, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Wdr31provided by RGD
    Official Full Name
    WD repeat domain 31provided by RGD
    Primary source
    RGD:1309367
    See related
    EnsemblRapid:ENSRNOG00000014869 AllianceGenome:RGD:1309367
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human WDR31 (WD repeat domain 31). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in Testes (RPKM 161.1), Kidney (RPKM 42.7) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Wdr31 in Genome Data Viewer
    Location:
    5q24
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (80914338..80933022, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (75897074..75917461, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (78305526..78324318, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA splicing tri-snRNP complex factor 4 Neighboring gene ring finger protein 183 Neighboring gene uncharacterized LOC102547534 Neighboring gene B-box and SPRY domain containing

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    WD repeat-containing protein 31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011976.2 → NP_001011976.2  WD repeat-containing protein 31

      See identical proteins and their annotated locations for NP_001011976.2

      Status: VALIDATED

      Source sequence(s)
      AI579135, BC079286
      UniProtKB/TrEMBL
      A6J7U7, D4ACM5
      Conserved Domains (2) summary
      cd00200
      Location:58 → 344
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:65 → 101
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      80914338..80933022 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017593245.3 → XP_017448734.1  WD repeat-containing protein 31 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A3G8, D4ACM5
      Conserved Domains (3) summary
      COG2319
      Location:53 → 342
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:57 → 343
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:64 → 100
      7WD40; WD40 repeat [structural motif]

    2. XM_063287339.1 → XP_063143409.1  WD repeat-containing protein 31 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A3G8

    3. XM_017593244.3 → XP_017448733.1  WD repeat-containing protein 31 isoform X1

      UniProtKB/TrEMBL
      A6J7U7, D4ACM5
      Conserved Domains (2) summary
      cd00200
      Location:58 → 344
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:65 → 101
      7WD40; WD40 repeat [structural motif]

    4. XM_017593246.3 → XP_017448735.1  WD repeat-containing protein 31 isoform X4

    5. XM_039109468.2 → XP_038965396.1  WD repeat-containing protein 31 isoform X1

      UniProtKB/TrEMBL
      A6J7U7, D4ACM5
      Conserved Domains (2) summary
      cd00200
      Location:58 → 344
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:65 → 101
      7WD40; WD40 repeat [structural motif]

    6. XM_063287345.1 → XP_063143415.1  WD repeat-containing protein 31 isoform X4

    7. XM_063287343.1 → XP_063143413.1  WD repeat-containing protein 31 isoform X4

    8. XM_039109469.2 → XP_038965397.1  WD repeat-containing protein 31 isoform X1

      UniProtKB/TrEMBL
      A6J7U7, D4ACM5
      Conserved Domains (2) summary
      cd00200
      Location:58 → 344
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:65 → 101
      7WD40; WD40 repeat [structural motif]

    9. XM_063287346.1 → XP_063143416.1  WD repeat-containing protein 31 isoform X5

    10. XM_063287344.1 → XP_063143414.1  WD repeat-containing protein 31 isoform X4

    11. XM_063287347.1 → XP_063143417.1  WD repeat-containing protein 31 isoform X5

    12. XM_063287341.1 → XP_063143411.1  WD repeat-containing protein 31 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A3G8

    13. XM_063287340.1 → XP_063143410.1  WD repeat-containing protein 31 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A3G8
      Related
      ENSRNOP00000103390.1, ENSRNOT00000123972.1

    14. XM_063287342.1 → XP_063143412.1  WD repeat-containing protein 31 isoform X3

      UniProtKB/TrEMBL
      I6L9G3
      Related
      ENSRNOP00000074822.1, ENSRNOT00000082642.3

    15. XM_063287348.1 → XP_063143418.1  WD repeat-containing protein 31 isoform X6

    16. XM_063287349.1 → XP_063143419.1  WD repeat-containing protein 31 isoform X7

    17. XM_063287350.1 → XP_063143420.1  WD repeat-containing protein 31 isoform X7

    RNA

    1. XR_005504385.2 RNA Sequence

    2. XR_010066352.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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