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    LINC01692 long intergenic non-protein coding RNA 1692 [ Homo sapiens (human) ]

    Gene ID: 339622, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01692provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1692provided by HGNC
    Primary source
    HGNC:HGNC:52480
    See related
    Ensembl:ENSG00000226983 AllianceGenome:HGNC:52480
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01692 in Genome Data Viewer
    Location:
    21q21.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (24840550..25057746)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (23198019..23415524)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (26212864..26430059)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1689 Neighboring gene MPRA-validated peak4389 silencer Neighboring gene long intergenic non-protein coding RNA 1684 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61838 Neighboring gene MPRA-validated peak4391 silencer Neighboring gene meiotic recombination hotspot A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18302 Neighboring gene uncharacterized LOC107985516 Neighboring gene MIA SH3 domain ER export factor 2 pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr21:26452976-26454175 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr21:26479627-26480826 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61844 Neighboring gene RN7SK pseudogene 236 Neighboring gene RNA, 5S ribosomal pseudogene 489

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046198.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000235, AP000402, AP001342
      Related
      ENST00000441009.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      24840550..25057746
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      23198019..23415524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)