U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC400748 uncharacterized LOC400748 [ Homo sapiens (human) ]

    Gene ID: 400748, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC400748
    Gene description
    uncharacterized LOC400748
    See related
    Ensembl:ENSG00000235143
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC400748 in Genome Data Viewer
    Location:
    1p35.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30858180..30860254)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (30710462..30712522)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (31331027..31333101)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1778 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31317155-31317674 Neighboring gene Sharpr-MPRA regulatory region 1191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31320286-31321089 Neighboring gene RN7SK pseudogene 91 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31322620-31323120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31323121-31323621 Neighboring gene Sharpr-MPRA regulatory region 1173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31343383-31344254 Neighboring gene syndecan 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 561 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31358623-31359123 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 635 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 636 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31363707-31364422 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31368603-31369362 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 563 Neighboring gene RNA, 7SL, cytoplasmic 371, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188385.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL445235
      Related
      ENST00000431202.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      30858180..30860254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      30710462..30712522
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)