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    CLDN10-AS1 CLDN10 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100874194, updated on 17-Sep-2024

    Summary

    Official Symbol
    CLDN10-AS1provided by HGNC
    Official Full Name
    CLDN10 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39907
    See related
    Ensembl:ENSG00000223392 AllianceGenome:HGNC:39907
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in salivary gland (RPKM 1.9), kidney (RPKM 0.6) and 1 other tissue See more
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    Genomic context

    See CLDN10-AS1 in Genome Data Viewer
    Location:
    13q32.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (95479444..95533910, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (94683998..94738452, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (96131698..96186164, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903193 Neighboring gene RNY4 pseudogene 27 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7876 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5441 Neighboring gene MEMO1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7877 Neighboring gene claudin 10 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7879 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:96144450-96144950 Neighboring gene Sharpr-MPRA regulatory region 5370 Neighboring gene Sharpr-MPRA regulatory region 2339 Neighboring gene DAZ interacting zinc finger protein 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:96294105-96295030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5443 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5444 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7880 Neighboring gene uncharacterized LOC124903194

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046533.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139376, AL357061
      Related
      ENST00000416909.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      95479444..95533910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      94683998..94738452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)