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    LINC01361 long intergenic non-protein coding RNA 1361 [ Homo sapiens (human) ]

    Gene ID: 101927498, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC01361provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1361provided by HGNC
    Primary source
    HGNC:HGNC:50595
    See related
    Ensembl:ENSG00000236268 AllianceGenome:HGNC:50595
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01361 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (82973882..82986208, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (82814210..82826532, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (83439565..83451891, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378814 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:83240976-83242175 Neighboring gene uncharacterized LOC107985396 Neighboring gene VISTA enhancer hs442 Neighboring gene long intergenic non-protein coding RNA 1362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1241 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:83633156-83633656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:83633657-83634157 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:83647525-83648108 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:83728934-83729516 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:83729517-83730099 Neighboring gene uncharacterized LOC105378816 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:83893396-83893919 Neighboring gene long intergenic non-protein coding RNA 1712

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome. Robertson HM, et al. Gene, 1997 Dec 31. PMID 9461395
    2. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110632.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BC037222
      Related
      ENST00000452834.6

    2. NR_110633.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5' most exon and is shorter compared to variant 1.
      Source sequence(s)
      BC037222, U80773
      Related
      ENST00000421931.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      82973882..82986208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      82814210..82826532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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