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    PRKCZ-AS1 PRKCZ antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506504, updated on 17-Sep-2024

    Summary

    Official Symbol
    PRKCZ-AS1provided by HGNC
    Official Full Name
    PRKCZ antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40477
    See related
    Ensembl:ENSG00000182873 AllianceGenome:HGNC:40477
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 2.5), small intestine (RPKM 2.2) and 23 other tissues See more
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    Genomic context

    See PRKCZ-AS1 in Genome Data Viewer
    Location:
    1p36.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (2181794..2183875, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (1616763..1618850, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (2113233..2115314, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:1974620-1975249 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:1977985-1978738 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:1978739-1979492 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 103 Neighboring gene PRKCZ divergent transcript Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1556 Neighboring gene protein kinase C zeta Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2016670-2017668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2026419-2026920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2026921-2027420 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 46 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2061703-2062652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2062653-2063602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2064553-2065502 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2068353-2069301 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2071397-2071980 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:2105285-2105451 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2107005-2107613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2111308-2112266 Neighboring gene uncharacterized LOC112268219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 47 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 105 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 106 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2127179-2127845 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:2130467-2131064 Neighboring gene FA core complex associated protein 20 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2135273-2136272 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:2136793-2136951 Neighboring gene uncharacterized LOC105378593

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Clone Names

    • FLJ10346, FLJ14128

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_146290.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK001208
      Related
      ENST00000333854.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      2181794..2183875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      1616763..1618850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)