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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_041811.1 RefSeqGene
- Range
-
5044..40384
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001303404.2 → NP_001290333.1 CWF19-like protein 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter compared to isoform 1.
- Source sequence(s)
-
AK001860, AK097895, AK225590, AK295303, BM476132, DB524268, DC299678
- UniProtKB/Swiss-Prot
-
Q69YN2
- Conserved Domains (3) summary
-
- cd07380
Location:9 → 229
- MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
- pfam04676
Location:422 → 495
- CwfJ_C_2; Protein similar to CwfJ C-terminus 2
- cl00228
Location:328 → 427
- HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
-
NM_001303405.2 → NP_001290334.1 CWF19-like protein 1 isoform 3
See identical proteins and their annotated locations for NP_001290334.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in the 5'-terminal exon, which results in use of a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
- Source sequence(s)
-
AK097895, AL832515, BM476132, DB524268, DC299678
- UniProtKB/Swiss-Prot
-
Q69YN2
- Conserved Domains (3) summary
-
- cd07380
Location:10 → 92
- MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
- pfam04676
Location:310 → 398
- CwfJ_C_2; Protein similar to CwfJ C-terminus 2
- cl00228
Location:191 → 286
- HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
-
NM_001303406.2 → NP_001290335.1 CWF19-like protein 1 isoform 3
See identical proteins and their annotated locations for NP_001290335.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in its 5' UTR, lacks part of the 5' coding region, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
- Source sequence(s)
-
AK097895, AK295303, BM476132, DB524268
- UniProtKB/Swiss-Prot
-
Q69YN2
- Conserved Domains (3) summary
-
- cd07380
Location:10 → 92
- MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
- pfam04676
Location:310 → 398
- CwfJ_C_2; Protein similar to CwfJ C-terminus 2
- cl00228
Location:191 → 286
- HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
-
NM_001303407.2 → NP_001290336.1 CWF19-like protein 1 isoform 4
See identical proteins and their annotated locations for NP_001290336.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in its 5' UTR, lacks part of the 5' coding region, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (4) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK097895, BM476132, DB524268
- Conserved Domains (2) summary
-
- pfam04676
Location:202 → 290
- CwfJ_C_2; Protein similar to CwfJ C-terminus 2
- cl00228
Location:83 → 178
- HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
-
NM_018294.6 → NP_060764.3 CWF19-like protein 1 isoform 1
See identical proteins and their annotated locations for NP_060764.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AK001860, AK097895, BM476132, DB524268, DC299678
- Consensus CDS
-
CCDS7489.1
- UniProtKB/Swiss-Prot
- B4DHX1, D3DR66, Q5W0I3, Q69YN2, Q96HC3, Q9H865, Q9NV13
- UniProtKB/TrEMBL
-
A0A0S2Z5E9
- Related
- ENSP00000326411.6, ENST00000354105.10
- Conserved Domains (3) summary
-
- cd07380
Location:9 → 229
- MPP_CWF19_N; Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain
- pfam04676
Location:447 → 535
- CwfJ_C_2; Protein similar to CwfJ C-terminus 2
- cl00228
Location:328 → 423
- HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
100232298..100267638 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
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NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
101116556..101151894 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)