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    KCNH7-AS1 KCNH7 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101929570, updated on 10-Oct-2023

    Summary

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    Official Symbol
    KCNH7-AS1provided by HGNC
    Official Full Name
    KCNH7 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40858
    See related
    Ensembl:ENSG00000237750 AllianceGenome:HGNC:40858
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.0) See more
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    Genomic context

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    See KCNH7-AS1 in Genome Data Viewer
    Location:
    2q24.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (162768936..162797972)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (163225808..163254821)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (163625446..163654482)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:163175227-163176426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12063 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12064 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_55234 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_55244 Neighboring gene grancalcin Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16719 Neighboring gene uncharacterized LOC124906084 Neighboring gene RNA, 5S ribosomal pseudogene 109 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_55297 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:163568111-163568632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16722 Neighboring gene Sharpr-MPRA regulatory region 9339 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:163721091-163721592 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:163721593-163722092 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_55438 Neighboring gene Sharpr-MPRA regulatory region 11367 Neighboring gene ribosomal protein L7 pseudogene 61 Neighboring gene uncharacterized LOC105373727 Neighboring gene RNA, U6 small nuclear 627, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • AC007740.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110258.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011900, BC042876
      Related
      ENST00000446838.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      162768936..162797972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      163225808..163254821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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