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    CNBD1 cyclic nucleotide binding domain containing 1 [ Homo sapiens (human) ]

    Gene ID: 168975, updated on 10-Oct-2024

    Summary

    Official Symbol
    CNBD1provided by HGNC
    Official Full Name
    cyclic nucleotide binding domain containing 1provided by HGNC
    Primary source
    HGNC:HGNC:26663
    See related
    Ensembl:ENSG00000176571 AllianceGenome:HGNC:26663
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.9) See more
    Orthologs
    NEW
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    Genomic context

    See CNBD1 in Genome Data Viewer
    Location:
    8q21.3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (86866415..87428652)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (87987207..88551974)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (87878643..88395087)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide gated channel subunit beta 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:87706251-87706896 Neighboring gene UBE2Q2 pseudogene 10 Neighboring gene uncharacterized LOC107986895 Neighboring gene NANOG hESC enhancer GRCh37_chr8:87980781-87981282 Neighboring gene NANOG hESC enhancer GRCh37_chr8:88152834-88153335 Neighboring gene NANOG hESC enhancer GRCh37_chr8:88208643-88209144 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:88354821-88355336 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:88437867-88438368 Neighboring gene IARS2 pseudogene 1 Neighboring gene vesicle trafficking 1 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ35802

    General protein information

    Preferred Names
    cyclic nucleotide-binding domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173538.3NP_775809.1  cyclic nucleotide-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_775809.1

      Status: VALIDATED

      Source sequence(s)
      AC090572, AC100799, BC117328
      Consensus CDS
      CCDS55259.1
      UniProtKB/Swiss-Prot
      Q8NA66
      UniProtKB/TrEMBL
      H0YC59
      Related
      ENSP00000430073.1, ENST00000518476.6
      Conserved Domains (1) summary
      cd00038
      Location:331434
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      86866415..87428652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047421411.1XP_047277367.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2

    2. XM_024447082.2XP_024302850.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

    3. XM_017013149.2XP_016868638.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      H0YC59
      Related
      ENSP00000430986.2, ENST00000523299.6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      87987207..88551974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054359872.1XP_054215847.1  cyclic nucleotide-binding domain-containing protein 1 isoform X3

    2. XM_054359870.1XP_054215845.1  cyclic nucleotide-binding domain-containing protein 1 isoform X1

    3. XM_054359871.1XP_054215846.1  cyclic nucleotide-binding domain-containing protein 1 isoform X2