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    SKAP1-AS2 SKAP1 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 105371807, updated on 17-Sep-2024

    Summary

    Official Symbol
    SKAP1-AS2provided by HGNC
    Official Full Name
    SKAP1 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:55570
    See related
    Ensembl:ENSG00000235300 AllianceGenome:HGNC:55570
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BTR; THRA1/BTR
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See SKAP1-AS2 in Genome Data Viewer
    Location:
    17q21.32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (48294347..48307829)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (49157790..49171272)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (46371709..46385191)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene src kinase associated phosphoprotein 1 Neighboring gene RNA, U6 small nuclear 1152, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:46296699-46297541 Neighboring gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12328 Neighboring gene Sharpr-MPRA regulatory region 12941 Neighboring gene small nucleolar RNA U3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12330 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8651 Neighboring gene uncharacterized LOC101927166

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • BT474 transcribed rearrangement
    • thyroid hormone receptor alpha

    Clone Names

    • AC090627.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131239.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC090627, BG185647, BG197541, DA697253, S71020
    2. NR_131240.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AC090627, BG185647, BG197541, S71020
      Related
      ENST00000421610.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      48294347..48307829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      49157790..49171272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)