U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC101927552 uncharacterized LOC101927552 [ Homo sapiens (human) ]

    Gene ID: 101927552, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101927552
    Gene description
    uncharacterized LOC101927552
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 2.9), thyroid (RPKM 1.4) and 24 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101927552 in Genome Data Viewer
    Location:
    9q21.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (83817666..83837583)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (95967352..95987319)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ubiquilin 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86321896-86322786 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86322787-86323675 Neighboring gene UBQLN1 antisense RNA 1 Neighboring gene uncharacterized LOC124902191 Neighboring gene G kinase anchoring protein 1 Neighboring gene MPRA-validated peak7279 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:86419564-86420465 Neighboring gene MPRA-validated peak7280 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19978 Neighboring gene uncharacterized LOC124900638 Neighboring gene kinesin family member 27 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:86535879-86536628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:86537243-86537747

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      83817666..83837583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001746793.2 RNA Sequence

    2. XR_001746789.2 RNA Sequence

    3. XR_001746790.2 RNA Sequence

    4. XR_001746791.3 RNA Sequence

    5. XR_001746785.2 RNA Sequence

    6. XR_001746784.2 RNA Sequence

    7. XR_002956861.2 RNA Sequence

    8. XR_001746788.2 RNA Sequence

    9. XR_001746794.2 RNA Sequence

    10. XR_001746795.2 RNA Sequence

    11. XR_007061619.1 RNA Sequence

    12. XR_007061618.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      95967352..95987319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007079614.1 RNA Sequence

    2. XR_007079611.1 RNA Sequence

    3. XR_007079612.1 RNA Sequence

    4. XR_007079605.1 RNA Sequence

    5. XR_007079609.1 RNA Sequence

    6. XR_007079608.1 RNA Sequence

    7. XR_007079613.1 RNA Sequence

    8. XR_007079610.1 RNA Sequence

    9. XR_007079615.1 RNA Sequence

    10. XR_007079616.1 RNA Sequence

    11. XR_007079607.1 RNA Sequence

    12. XR_007079606.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials