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    LINC02981 long intergenic non-protein coding RNA 2981 [ Homo sapiens (human) ]

    Gene ID: 441204, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC02981provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2981provided by HGNC
    Primary source
    HGNC:HGNC:56055
    See related
    Ensembl:ENSG00000214870 AllianceGenome:HGNC:56055
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 3.5), fat (RPKM 2.3) and 21 other tissues See more
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    Genomic context

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    See LINC02981 in Genome Data Viewer
    Location:
    7p15.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (26398569..26540950)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (26534255..26676631)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (26438189..26580569)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18036 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18037 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25788 Neighboring gene ribosomal protein L23 pseudogene 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26341907-26342408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26342409-26342908 Neighboring gene sorting nexin 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26375053-26375568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26385227-26386154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18038 Neighboring gene SNX10 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26437325-26438281 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18040 Neighboring gene NANOG hESC enhancer GRCh37_chr7:26455397-26455952 Neighboring gene uncharacterized LOC105375202 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26480672-26481247 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:26481248-26481822 Neighboring gene VISTA enhancer hs769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26547862-26548362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:26548363-26548863 Neighboring gene uncharacterized LOC124901605 Neighboring gene KIAA0087 lncRNA Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:26589438-26590637 Neighboring gene long intergenic non-protein coding RNA 3095

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. The long non-coding RNA LOC441204 enhances cell growth in human glioma. Lin TK, et al. Sci Rep, 2017 Jul 17. PMID 28717243, Free PMC Article
    2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. High LOC441204 expression is associated with glioma.
      Title: The long non-coding RNA LOC441204 enhances cell growth in human glioma.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ42480, AC004540.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148499.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AC004947

    2. NR_148500.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AC004947

    3. NR_148501.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AC004947

    4. NR_148502.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AC004947

    5. NR_148503.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540, AK056484, BC039415

    6. NR_148504.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC004540

    7. NR_148505.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) lacks multiple 3' exons and contains an alternate 3' exon compared to variant 1.
      Source sequence(s)
      AA806478, AC004540, BX097017, DA363385
      Related
      ENST00000449537.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      26398569..26540950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      26534255..26676631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_015364.2: Suppressed sequence

      Description
      NR_015364.2: This RefSeq was removed because this transcript is thought to be partial.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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