NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001008396.3 → NP_001008397.1 WD repeat and HMG-box DNA-binding protein 1 isoform 2
See identical proteins and their annotated locations for NP_001008397.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform 2) that has a shortened N-terminus, compared to isoform 1.
- Source sequence(s)
-
AL160471, BC063041, CB053003, DA189308
- Consensus CDS
-
CCDS41955.1
- UniProtKB/TrEMBL
-
A8KAE0
- Related
- ENSP00000399349.2, ENST00000420358.2
- Conserved Domains (5) summary
-
- smart00398
Location:894 → 951
- HMG; high mobility group
- COG2319
Location:2 → 176
- WD40; WD40 repeat [General function prediction only]
- pfam12341
Location:309 → 591
- Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
- sd00039
Location:17 → 59
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:5 → 165
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_007086.4 → NP_009017.1 WD repeat and HMG-box DNA-binding protein 1 isoform 1
See identical proteins and their annotated locations for NP_009017.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AL160471, BC063041, CB053003, DB082418
- Consensus CDS
-
CCDS9721.1
- UniProtKB/Swiss-Prot
- C9JW18, F6W0U7, O75717
- UniProtKB/TrEMBL
-
A8KAE0
- Related
- ENSP00000353793.3, ENST00000360586.8
- Conserved Domains (5) summary
-
- smart00398
Location:1017 → 1074
- HMG; high mobility group
- COG2319
Location:11 → 299
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:10 → 288
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam12341
Location:432 → 714
- Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
- sd00039
Location:21 → 54
- 7WD40; WD40 repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000014.9 Reference GRCh38.p14 Primary Assembly
- Range
-
54938949..55027099 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006720012.2 → XP_006720075.1 WD repeat and HMG-box DNA-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A8KAE0
- Conserved Domains (5) summary
-
- smart00398
Location:1015 → 1072
- HMG; high mobility group
- COG2319
Location:11 → 299
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:10 → 288
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam12341
Location:432 → 714
- Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
- sd00039
Location:21 → 54
- 7WD40; WD40 repeat [structural motif]
-
XM_011536373.3 → XP_011534675.1 WD repeat and HMG-box DNA-binding protein 1 isoform X2
- UniProtKB/TrEMBL
-
B3KMD2
- Conserved Domains (2) summary
-
- smart00398
Location:654 → 711
- HMG; high mobility group
- pfam12341
Location:69 → 351
- Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
Alternate T2T-CHM13v2.0
Genomic
-
NC_060938.1 Alternate T2T-CHM13v2.0
- Range
-
49144139..49232288 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054375294.1 → XP_054231269.1 WD repeat and HMG-box DNA-binding protein 1 isoform X1
-
XM_054375295.1 → XP_054231270.1 WD repeat and HMG-box DNA-binding protein 1 isoform X2