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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851315, updated on 11-Sep-2024

    Summary

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    Primary source
    SGD:S000002370
    Locus tag
    YDL211C
    See related
    AllianceGenome:SGD:S000002370; FungiDB:YDL211C; VEuPathDB:YDL211C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in fungal-type vacuole. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_001136.10 (79294..80412, complement)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene Nop6p Neighboring gene Shr3p Neighboring gene tRNA-Gly Neighboring gene Uga4p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive and quantitative mapping of RNA-protein interactions across a transcribed eukaryotic genome. She R, et al. Proc Natl Acad Sci U S A, 2017 Apr 4. PMID 28325876, Free PMC Article
    2. Association of yeast Upf1p with direct substrates of the NMD pathway. Johansson MJ, et al. Proc Natl Acad Sci U S A, 2007 Dec 26. PMID 18087042, Free PMC Article
    3. The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation. Castelli LM, et al. PLoS Genet, 2015 May. PMID 25973932, Free PMC Article
    4. Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Babu M, et al. Nature, 2012 Sep 27. PMID 22940862
    5. The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Jacq C, et al. Nature, 1997 May 29. PMID 9169867

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in fungal-type vacuole HDA PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_010070.1
    • hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; YDL211C has a paralog, TDA7, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      79294..80412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180271.1 → NP_010070.1  TPA: uncharacterized protein YDL211C [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010070.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VRE3, Q12121
      UniProtKB/TrEMBL
      A6ZXC2, B3LH91, B5VF65, N1P6B7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q12121.1

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