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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029479.1 RefSeqGene
- Range
-
5015..12989
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_032548.4 → NP_115937.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_115937.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as BPOZ type 1) contains an alternate exon in its 5' UTR, and uses a downstream in-frame start codon, compared to variant 2. The encoded isoform (1) has a shorter N-terminus, compared to isoform 2, and it lacks the ankyrin repeat region.
- Source sequence(s)
-
AB053324, AI337369, BF664138, BM671027
- Consensus CDS
-
CCDS46901.1
- UniProtKB/TrEMBL
-
B2RCJ9
- Related
- ENSP00000412684.2, ENST00000453791.6
- Conserved Domains (3) summary
-
- smart00225
Location:131 → 234
- BTB; Broad-Complex, Tramtrack and Bric a brac
- pfam00651
Location:131 → 230
- BTB; BTB/POZ domain
- cl02518
Location:8 → 68
- BTB; BTB/POZ domain
-
NM_172027.3 → NP_742024.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform 2
See identical proteins and their annotated locations for NP_742024.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as BPOZ type 2) encodes the longer isoform (2).
- Source sequence(s)
-
AB053325, AI337369, BF664138, BM671027
- Consensus CDS
-
CCDS3045.1
- UniProtKB/Swiss-Prot
- D3DNB0, Q6ZNU9, Q71MF1, Q969K4, Q96S62, Q96S63
- Related
- ENSP00000232744.8, ENST00000232744.13
- Conserved Domains (4) summary
-
- smart00225
Location:273 → 376
- BTB; Broad-Complex, Tramtrack and Bric a brac
- cd00204
Location:6 → 78
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:35 → 66
- ANK; ANK repeat [structural motif]
- pfam00651
Location:105 → 178
- BTB; BTB/POZ domain
RNA
-
NR_033429.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as BPOZ type 3) uses an alternate splice site in an internal exon, compared to variant 2. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB053326, AI337369, BF664138, BM671027
- Related
-
ENST00000475042.5
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
127672952..127680926
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006713769.4 → XP_006713832.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X1
- Conserved Domains (5) summary
-
- smart00225
Location:275 → 378
- BTB; Broad-Complex, Tramtrack and Bric a brac
- cd00204
Location:3 → 78
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam00651
Location:107 → 212
- BTB; BTB/POZ domain
- pfam13857
Location:23 → 78
- Ank_5; Ankyrin repeats (many copies)
- sd00045
Location:37 → 68
- ANK; ANK repeat [structural motif]
-
XM_017007285.2 → XP_016862774.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2
-
XM_017007286.3 → XP_016862775.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
130407613..130415593
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054348018.1 → XP_054203993.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X1
-
XM_054348019.1 → XP_054203994.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2
-
XM_054348020.1 → XP_054203995.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X3
-
XM_054348022.1 → XP_054203997.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X4
-
XM_054348021.1 → XP_054203996.1 ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X4
RNA
-
XR_008486809.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_172028.1: Suppressed sequence
- Description
- NM_172028.1: This RefSeq was permanently suppressed because currently there is insufficient support for the protein.