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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052015.1 RefSeqGene
- Range
-
5003..156983
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001112.4 → NP_001103.1 double-stranded RNA-specific editase 1 isoform 1
See identical proteins and their annotated locations for NP_001103.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also known as ADAR2a-L1 or DRADA2a, lacks the ALU cassette insert and contains the long C-terminal region, as compared to variant 2. The resulting isoform (1), also known as hRED1-Short, lacks an internal segment, compared to isoform 2.
- Source sequence(s)
-
AB194370, BC030663, BU726292
- Consensus CDS
-
CCDS33590.1
- UniProtKB/TrEMBL
-
Q86XN4
- Related
- ENSP00000015877.6, ENST00000348831.9
- Conserved Domains (2) summary
-
- smart00552
Location:322 → 698
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd00048
Location:79 → 142
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
-
NM_001160230.2 → NP_001153702.1 double-stranded RNA-specific editase 1 isoform 7
See identical proteins and their annotated locations for NP_001153702.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7), also known as ADAR2d, lacks the ALU cassette insert and an alternate segment in the 3' coding region, compared to variant 2. The resulting isoform (7) lacks an internal segment and has a shorter and distinct C-terminus, compared to isoform 2, and contains the short C-terminal region. Variants 7 and 10 encode the same isoform.
- Source sequence(s)
-
AB194373, BC030663, BU726292
- UniProtKB/TrEMBL
-
Q86XN4
- Conserved Domains (2) summary
-
- smart00552
Location:322 → 672
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd00048
Location:79 → 142
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
-
NM_001346687.2 → NP_001333616.1 double-stranded RNA-specific editase 1 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AL133499, BU726292, BX322560, FJ169506
- Consensus CDS
-
CCDS93105.1
- UniProtKB/TrEMBL
- A0A994J4V7, O43263
- Related
- ENSP00000516123.1, ENST00000705393.1
-
NM_001346688.2 → NP_001333617.1 double-stranded RNA-specific editase 1 isoform 7
Status: REVIEWED
- Description
- Transcript Variant: Variants 7 and 10 encode the same isoform (7).
- Source sequence(s)
-
AL133499, AP001579, BU726292, BX322560
- UniProtKB/TrEMBL
-
Q86XN4
-
NM_001410722.1 → NP_001397651.1 double-stranded RNA-specific editase 1 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AL133499, BX322560
- Consensus CDS
-
CCDS93106.1
- UniProtKB/TrEMBL
-
A0A994J7T5
- Related
- ENSP00000516122.1, ENST00000705392.1
-
NM_015833.4 → NP_056648.1 double-stranded RNA-specific editase 1 isoform 2
See identical proteins and their annotated locations for NP_056648.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), also known as DRADA2b, represents the longest transcript, which includes the ALU cassette insert and the long C-terminal region. It encodes the longest isoform (2), also known as hRED1-Long.
- Source sequence(s)
-
AB194370, BC030663, BU726292, U76421
- Consensus CDS
-
CCDS33589.1
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
- UniProtKB/TrEMBL
-
O43263
- Related
- ENSP00000353920.3, ENST00000360697.4
- Conserved Domains (3) summary
-
- smart00552
Location:322 → 738
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd19895
Location:75 → 146
- DSRM_RED1_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
- cd19898
Location:232 → 301
- DSRM_RED1_rpt2; second double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
-
NM_015834.4 → NP_056649.1 double-stranded RNA-specific editase 1 isoform 3
See identical proteins and their annotated locations for NP_056649.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also known as DRADA2c, lacks an alternate segment in the 3' coding region, compared to variant 2. The resulting isoform (3) has a shorter and distinct C-terminus, compared to isoform 2, and contains the ALU cassette insert and the short C-terminal region.
- Source sequence(s)
-
BC030663, BU726292, U76422
- Consensus CDS
-
CCDS42970.1
- UniProtKB/TrEMBL
-
O43263
- Related
- ENSP00000374513.4, ENST00000389863.8
- Conserved Domains (3) summary
-
- smart00552
Location:322 → 712
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd00048
Location:79 → 142
- DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
- pfam13900
Location:471 → 496
- GVQW; Putative domain of unknown function
RNA
-
NR_027672.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5), also known as ADAR2g, lacks the second coding exon, the ALU cassette insert, and a segment of the 3' UTR, compared to transcript variant 2. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD), and no protein is expressed by in vitro translation according to Kawahara et al. (PMID: 16297572).
- Source sequence(s)
-
AB194369, BC030663, BU726292
-
NR_027673.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) contains an additional 5' exon, lacks the ALU cassette, and lacks a segment of the 3' UTR, compared to variant 2. This variant is represented as non-coding because it contains an uORF that is predicted to inhibit translation of the primary ORF. The transcript is also a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB194370, AY135659, BC030663, BU726292
-
NR_027674.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), also known as ADAR2a-L2, lacks the ALU cassette insert and a segment of the 3' UTR, compared to variant 2. This variant is represented as non-coding because the additional splicing in the 3' UTR renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB194371, BC030663, BU726292
-
NR_073200.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) lacks an internal portion of the last exon compared to variant 2. This variant is represented as non-coding because the additional splicing in the 3' UTR renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
BC030663, BU726292, U76421
-
NR_144483.2 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AB194372, BC030663, BU726292
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000021.9 Reference GRCh38.p14 Primary Assembly
- Range
-
45074578..45226563
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017028251.2 → XP_016883740.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
- UniProtKB/TrEMBL
-
O43263
- Related
- ENSP00000387480.2, ENST00000449478.2
- Conserved Domains (3) summary
-
- smart00552
Location:322 → 738
- ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
- cd19895
Location:75 → 146
- DSRM_RED1_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
- cd19898
Location:232 → 301
- DSRM_RED1_rpt2; second double-stranded RNA binding motif of RNA-editing deaminase 1 (RED1) and similar proteins
-
XM_047440660.1 → XP_047296616.1 double-stranded RNA-specific editase 1 isoform X1
-
XM_047440661.1 → XP_047296617.1 double-stranded RNA-specific editase 1 isoform X1
-
XM_047440665.1 → XP_047296621.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
-
XM_047440667.1 → XP_047296623.1 double-stranded RNA-specific editase 1 isoform X8
-
XM_047440662.1 → XP_047296618.1 double-stranded RNA-specific editase 1 isoform X2
-
XM_047440663.1 → XP_047296619.1 double-stranded RNA-specific editase 1 isoform X4
-
XM_047440666.1 → XP_047296622.1 double-stranded RNA-specific editase 1 isoform X7
-
XM_047440664.1 → XP_047296620.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
-
XM_017028244.3 → XP_016883733.1 double-stranded RNA-specific editase 1 isoform X3
- UniProtKB/TrEMBL
-
O43263
-
XM_017028253.3 → XP_016883742.1 double-stranded RNA-specific editase 1 isoform X6
- UniProtKB/TrEMBL
-
Q86XN4
RNA
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XR_001754787.3 RNA Sequence
-
XR_007067777.1 RNA Sequence
-
XR_007067778.1 RNA Sequence
-
XR_001754792.3 RNA Sequence
-
XR_001754791.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060945.1 Alternate T2T-CHM13v2.0
- Range
-
43436861..43590594
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054324308.1 → XP_054180283.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
-
XM_054324302.1 → XP_054180277.1 double-stranded RNA-specific editase 1 isoform X1
-
XM_054324307.1 → XP_054180282.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
-
XM_054324311.1 → XP_054180286.1 double-stranded RNA-specific editase 1 isoform X8
-
XM_054324303.1 → XP_054180278.1 double-stranded RNA-specific editase 1 isoform X2
-
XM_054324305.1 → XP_054180280.1 double-stranded RNA-specific editase 1 isoform X4
-
XM_054324310.1 → XP_054180285.1 double-stranded RNA-specific editase 1 isoform X7
-
XM_054324306.1 → XP_054180281.1 double-stranded RNA-specific editase 1 isoform X5
- UniProtKB/Swiss-Prot
- A6NFK8, A6NJ84, C3TTQ1, C3TTQ2, C9JUP4, G5E9B4, O00395, O00465, O00691, O00692, P78555, P78563, Q4AE77, Q4AE79, Q6P0M9, Q8NFA1, Q8NFD1
-
XM_054324304.1 → XP_054180279.1 double-stranded RNA-specific editase 1 isoform X3
-
XM_054324309.1 → XP_054180284.1 double-stranded RNA-specific editase 1 isoform X6
RNA
-
XR_008485323.1 RNA Sequence
-
XR_008485324.1 RNA Sequence
-
XR_008485325.1 RNA Sequence
-
XR_008485326.1 RNA Sequence
-
XR_008485327.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001033049.1: Suppressed sequence
- Description
- NM_001033049.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate, and the annotated CDS is unlikely to be translated because of an upstream ORF.