U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ANKRD20A2P ankyrin repeat domain 20 family member A2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 441430, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    ANKRD20A2Pprovided by HGNC
    Official Full Name
    ankyrin repeat domain 20 family member A2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:31979
    See related
    Ensembl:ENSG00000291287 AllianceGenome:HGNC:31979
    Gene type
    pseudo
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ANKRD20A2
    Expression
    Biased expression in testis (RPKM 5.4), thyroid (RPKM 0.9) and 12 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ANKRD20A2P in Genome Data Viewer
    Location:
    9p11.2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (40222102..40282358)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (40237964..40297265)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724431 Neighboring gene meprin A subunit alpha pseudogene 1 Neighboring gene uncharacterized LOC105369249 Neighboring gene RNA, U6 small nuclear 1269, pseudogene Neighboring gene sorting nexin 18 pseudogene 8 Neighboring gene family with sequence similarity 95 member B1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
    2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Other Names

    • ankyrin repeat domain 20 family, member A2
    • ankyrin repeat domain-containing protein 20A2

    Clone Names

    • MGC176486

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      40222102..40282358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004837502.2 RNA Sequence

    2. XR_007061496.1 RNA Sequence

    3. XR_004837499.2 RNA Sequence

    4. XR_004837500.2 RNA Sequence

    5. XR_004837501.2 RNA Sequence

      Related
      ENST00000673925.1

    6. XR_004837503.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      40237964..40297265
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_008488120.1 RNA Sequence

    2. XR_008488121.1 RNA Sequence

    3. XR_008488122.1 RNA Sequence

    4. XR_008488123.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001012421.1: Suppressed sequence

      Description
      NM_001012421.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5SQ80.1 GenPept UniProtKB/Swiss-Prot:Q5SQ80

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools