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    CCDC18-AS1 CCDC18 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100131564, updated on 17-Sep-2024

    Summary

    Official Symbol
    CCDC18-AS1provided by HGNC
    Official Full Name
    CCDC18 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:52262
    See related
    AllianceGenome:HGNC:52262
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in thyroid (RPKM 7.3), lymph node (RPKM 7.2) and 24 other tissues See more
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    Genomic context

    See CCDC18-AS1 in Genome Data Viewer
    Location:
    1p22.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (93310109..93345811, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (93155695..93191532, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (93775666..93811368, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 18 Neighboring gene uncharacterized LOC107985521 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:93742305-93743272 Neighboring gene ribosomal protein L39 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1329 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:93811059-93811594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1331 Neighboring gene down-regulator of transcription 1 Neighboring gene F-box and WD repeat domain containing 11 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • ENST00000440778.1

    Clone Names

    • FLJ42965

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034089.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137159

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      93310109..93345811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      93155695..93191532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)