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    LINC00543 long intergenic non-protein coding RNA 543 [ Homo sapiens (human) ]

    Gene ID: 100132234, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00543provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 543provided by HGNC
    Primary source
    HGNC:HGNC:43678
    See related
    Ensembl:ENSG00000260704 AllianceGenome:HGNC:43678
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

    See LINC00543 in Genome Data Viewer
    Location:
    13q12.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (27953526..27955363)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (27174909..27176750)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (28527663..28529500)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28497939-28498606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28498607-28499273 Neighboring gene pancreatic and duodenal homeobox 1 Neighboring gene ATP synthase F1 subunit epsilon pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5205 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr13:28539919-28540610 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:28540611-28541302 Neighboring gene caudal type homeobox 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:28542687-28543378 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr13:28545455-28546102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:28546103-28546749 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr13:28552766-28553299 Neighboring gene uncharacterized LOC105370132 Neighboring gene ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135254.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591024, KF455740
      Related
      ENST00000567234.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      27953526..27955363
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      27174909..27176750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)