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    SLC38A2-AS1 SLC38A2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 102723757, updated on 22-Oct-2024

    Summary

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    Official Symbol
    SLC38A2-AS1provided by HGNC
    Official Full Name
    SLC38A2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55454
    See related
    Ensembl:ENSG00000258096 AllianceGenome:HGNC:55454
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in urinary bladder (RPKM 16.5), placenta (RPKM 16.5) and 22 other tissues See more
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    Genomic context

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    See SLC38A2-AS1 in Genome Data Viewer
    Location:
    12q13.11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (46372783..46373778)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (46332342..46333337)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (46766566..46767561)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46662284-46663266 Neighboring gene uncharacterized LOC105378248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4383 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:46674619-46675430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6245 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46765735-46766438 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4385 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6248 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:46776823-46777330 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4387 Neighboring gene solute carrier family 38 member 2 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46780024-46780525 Neighboring gene SLC38A4 antisense RNA 1 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46789058-46789559 Neighboring gene uncharacterized LOC124902923 Neighboring gene NANOG hESC enhancer GRCh37_chr12:46824129-46824630 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4388 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6249 Neighboring gene Sharpr-MPRA regulatory region 10724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6253 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:46979048-46979802 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:46979803-46980557 Neighboring gene olfactory receptor family 7 subfamily A member 19 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187299.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025031
      Related
      ENST00000793295.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      46372783..46373778
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      46332342..46333337
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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