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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_000012.2
- Range
-
131167..223176
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_018914.3 → NP_061737.1 protocadherin gamma-A11 isoform 1 precursor
See identical proteins and their annotated locations for NP_061737.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) includes the constant region exons and encodes the longest isoform (1).
- Source sequence(s)
-
AA329824, AF152320, DA503678
- Consensus CDS
-
CCDS47294.1
- UniProtKB/Swiss-Prot
- B7ZVY8, Q9Y5D8, Q9Y5D9, Q9Y5H2
- Related
- ENSP00000381589.2, ENST00000398587.7
- Conserved Domains (4) summary
-
- cd11304
Location:247 → 344
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08266
Location:31 → 113
- Cadherin_2; Cadherin-like
- pfam15974
Location:812 → 908
- Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
- pfam16492
Location:689 → 773
- Cadherin_C_2; Cadherin cytoplasmic C-terminal
-
NM_032091.2 → NP_114480.1 protocadherin gamma-A11 isoform 2 precursor
See identical proteins and their annotated locations for NP_114480.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) utilizes the large, first exon then continues into the downstream intron 1 sequence before terminating. This one-exon transcript encodes an isoform (2) that is shorter than isoform 1 and has a unique C-terminus.
- Source sequence(s)
-
AA329824, AC005618, AF152505, BE007760, BF327891, DA503678
- Consensus CDS
-
CCDS75345.1
- UniProtKB/Swiss-Prot
-
Q9Y5H2
- Related
- ENSP00000480917.1, ENST00000622044.1
- Conserved Domains (3) summary
-
- cd11304
Location:247 → 344
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08266
Location:31 → 113
- Cadherin_2; Cadherin-like
- pfam16492
Location:689 → 773
- Cadherin_C_2; Cadherin cytoplasmic C-terminal
-
NM_032092.2 → NP_114481.1 protocadherin gamma-A11 isoform 3 precursor
See identical proteins and their annotated locations for NP_114481.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) utilizes an alternative splice donor site that truncates exon 1. This shortest isoform (3) lacks the transmembrane region and has five complete and one partial cadherin domain.
- Source sequence(s)
-
AA329824, AF152320, AF152504, DA503678
- Consensus CDS
-
CCDS54930.1
- UniProtKB/Swiss-Prot
-
Q9Y5H2
- Related
- ENSP00000428333.1, ENST00000518882.2
- Conserved Domains (3) summary
-
- cd11304
Location:247 → 344
- Cadherin_repeat; Cadherin tandem repeat domain
- pfam08266
Location:31 → 113
- Cadherin_2; Cadherin-like
- pfam15974
Location:627 → 723
- Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
141421051..141512975
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
141946885..142038959
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)