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    GOLGA6L22 golgin A6 family like 22 [ Homo sapiens (human) ]

    Gene ID: 440243, updated on 17-Sep-2024

    Summary

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    Official Symbol
    GOLGA6L22provided by HGNC
    Official Full Name
    golgin A6 family like 22provided by HGNC
    Primary source
    HGNC:HGNC:50289
    See related
    Ensembl:ENSG00000277865 AllianceGenome:HGNC:50289
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 7.7) See more
    Orthologs
    all
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    Genomic context

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    See GOLGA6L22 in Genome Data Viewer
    Location:
    15q11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (22458903..22469226)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (20131000..20141341)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (23403870..23414193, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A8 family member E, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 545, pseudogene Neighboring gene uncharacterized LOC124900355 Neighboring gene MPHOSPH10 pseudogene 9 Neighboring gene pectinesterase inhibitor 10-like Neighboring gene HERC2 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    golgin subfamily A member 6-like protein 22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396956.1 → NP_001383885.1  golgin subfamily A member 6-like protein 22 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC100757
      Consensus CDS
      CCDS91962.1
      UniProtKB/Swiss-Prot
      A0A087X0V3, H0YM25
      Related
      ENSP00000483673.2, ENST00000622895.2
      Conserved Domains (3) summary
      PTZ00121
      Location:213 → 747
      PTZ00121; MAEBL; Provisional
      smart00818
      Location:6 → 71
      Amelogenin; Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth
      TIGR02169
      Location:102 → 277
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_001396957.1 → NP_001383886.1  golgin subfamily A member 6-like protein 22 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC100757

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      22458903..22469226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160017.1 Reference GRCh38.p14 PATCHES

      Range
      3353066..3361572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047443235.1 → XP_047299191.1  golgin subfamily A member 6-like protein 22 isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      20131000..20141341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001271664.3: Suppressed sequence

      Description
      NM_001271664.3: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    H0YM25.3 GenPept UniProtKB/Swiss-Prot:H0YM25

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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