U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GALNT9-AS1 GALNT9 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100130238, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GALNT9-AS1provided by HGNC
    Official Full Name
    GALNT9 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56353
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in spleen (RPKM 3.3), thyroid (RPKM 1.6) and 2 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GALNT9-AS1 in Genome Data Viewer
    Location:
    12q24.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (132275391..132280900)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (132328533..132334042)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (132851977..132857486)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5114 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5115 Neighboring gene long intergenic non-protein coding RNA 2361 Neighboring gene uncharacterized LOC105370091 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132703817-132704677 Neighboring gene MS43a minisatellite repeat instability region Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:132831859-132832379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132832380-132832899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132849568-132850462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132850463-132851355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132852165-132852941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132854851-132855501 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132860363-132861016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132861671-132862324 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:132863043-132864242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:132899827-132900476 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:132903614-132904813 Neighboring gene uncharacterized LOC101928416 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:132920815-132922014 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:132949478-132949627 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:132982751-132983387 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:132991529-132991667 Neighboring gene uncharacterized LOC105370092 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:133005261-133005795 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5116

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Fei T, et al. Proc Natl Acad Sci U S A, 2017 Jun 27. PMID 28611215, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024563.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC148477, AK123118, BM984287, DA121414, DA629674

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      132275391..132280900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160007.1 Reference GRCh38.p14 PATCHES

      Range
      181751..187260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      132328533..132334042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.