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    LINC02380 long intergenic non-protein coding RNA 2380 [ Homo sapiens (human) ]

    Gene ID: 101928851, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02380provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2380provided by HGNC
    Primary source
    HGNC:HGNC:53303
    See related
    Ensembl:ENSG00000248505 AllianceGenome:HGNC:53303
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02380 in Genome Data Viewer
    Location:
    4q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (57425872..57465986)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (60916794..60956916)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (58292038..58332152)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene IGFBP7 antisense RNA 1 Neighboring gene uncharacterized LOC107986283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:58022957-58023466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:58023467-58023975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:58060229-58060730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:58060731-58061230 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:58090676-58091410 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:58131975-58132531 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:58153017-58153564 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:58153565-58154110 Neighboring gene ribosomal protein S26 pseudogene 24 Neighboring gene Sharpr-MPRA regulatory region 5602 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:58338702-58339202 Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:58411030-58411548 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:58411549-58412065 Neighboring gene uncharacterized LOC105377670

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125907.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013724, BC034799
      Related
      ENST00000664387.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      57425872..57465986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      60916794..60956916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)