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    LINC01679 long intergenic non-protein coding RNA 1679 [ Homo sapiens (human) ]

    Gene ID: 101928399, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01679provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1679provided by HGNC
    Primary source
    HGNC:HGNC:52469
    See related
    Ensembl:ENSG00000237989 AllianceGenome:HGNC:52469
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_00029157
    Expression
    Broad expression in skin (RPKM 1.5), lymph node (RPKM 0.8) and 22 other tissues See more
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    Genomic context

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    See LINC01679 in Genome Data Viewer
    Location:
    21q22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (43358055..43362349, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (41713299..41717591, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (44777935..44782229, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44730914-44731414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44731415-44731915 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44733831-44734594 Neighboring gene long intergenic non-protein coding RNA 322 Neighboring gene putative uncharacterized protein encoded by LINC00322 Neighboring gene MPRA-validated peak4418 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44748650-44749536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44752021-44752551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44752552-44753081 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44770223-44770882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18539 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18540 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44779591-44780148 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44780149-44780705 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18542 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13360 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44783485-44784024 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:44784578-44785777 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44786021-44786699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44786700-44787379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44788731-44789288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44789289-44789846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44793172-44793672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44794790-44795323 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44805422-44806000 Neighboring gene MPRA-validated peak4419 silencer Neighboring gene long intergenic non-protein coding RNA 3039 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44817000-44817548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:44817549-44818097 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:44818515-44819191 Neighboring gene uncharacterized LOC124905028

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide association study of the metabolic syndrome in Indian Asian men.
    EBI GWAS Catalog

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Clone Names

    • AP001046.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131902.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001046, BU736390, BX390224
      Related
      ENST00000442815.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      43358055..43362349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      41713299..41717591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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