NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001253829.2 → NP_001240758.1 protein tyrosine phosphatase domain-containing protein 1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in the 5' coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (3) is longer than isoform 1.
- Source sequence(s)
-
AK289692, AW052114, BC067120, DA218576, DA312531
- Consensus CDS
-
CCDS75860.1
- UniProtKB/TrEMBL
- A0A087WTF0, A8K0X7
- Related
- ENSP00000477817.1, ENST00000620992.5
- Conserved Domains (1) summary
-
- smart00404
Location:208 → 289
- PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
-
NM_001253830.2 → NP_001240759.1 protein tyrosine phosphatase domain-containing protein 1 isoform 4
See identical proteins and their annotated locations for NP_001240759.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, uses an alternate splice site in the coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (4) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK094631, AW052114, BC051654, BC067120
- UniProtKB/TrEMBL
-
A8K0X7
- Conserved Domains (1) summary
-
- smart00404
Location:154 → 235
- PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
-
NM_152422.4 → NP_689635.3 protein tyrosine phosphatase domain-containing protein 1 isoform 1
See identical proteins and their annotated locations for NP_689635.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform (1).
- Source sequence(s)
-
AK094631, AK124912, AW052114, BC031279, BC067120, DA218576
- Consensus CDS
-
CCDS6708.1
- UniProtKB/TrEMBL
-
A8K0X7
- Related
- ENSP00000288976.3, ENST00000288976.3
- Conserved Domains (1) summary
-
- smart00404
Location:206 → 287
- PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
-
NM_177995.3 → NP_818931.1 protein tyrosine phosphatase domain-containing protein 1 isoform 2
See identical proteins and their annotated locations for NP_818931.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK094631, AW052114, BC067120
- Consensus CDS
-
CCDS6707.1
- UniProtKB/Swiss-Prot
- A2A3K4, Q5T3M4, Q6NXE8, Q8IWM1, Q8N1X4, Q8N9F5
- UniProtKB/TrEMBL
-
A8K0X7
- Related
- ENSP00000364509.3, ENST00000375360.7
- Conserved Domains (1) summary
-
- smart00404
Location:154 → 235
- PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
94030813..94109856
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
106198554..106277594
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)