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    CCT6P1 chaperonin containing TCP1 subunit 6 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 643253, updated on 22-Oct-2024

    Summary

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    Official Symbol
    CCT6P1provided by HGNC
    Official Full Name
    chaperonin containing TCP1 subunit 6 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:33094
    See related
    Ensembl:ENSG00000291124 AllianceGenome:HGNC:33094
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCT6-5P; CCT6AP1
    Expression
    Ubiquitous expression in testis (RPKM 7.0), bone marrow (RPKM 6.7) and 25 other tissues See more
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    Genomic context

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    See CCT6P1 in Genome Data Viewer
    Location:
    7q11.21
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65751105..65763675)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66973233..66985797)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65216092..65228662)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 8 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:65103805-65104363 Neighboring gene long intergenic non-protein coding RNA 3006 Neighboring gene integrator complex subunit 4 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 6763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26074 Neighboring gene small nucleolar RNA, H/ACA box 15B-2 Neighboring gene small nucleolar RNA, H/ACA box 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65234206-65234829 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65234830-65235452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240377-65240878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240879-65241378 Neighboring gene general transcription factor IIi pseudogene 5 Neighboring gene RNA, U6 small nuclear 912, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Glatter T, et al. Mol Syst Biol, 2009. PMID 19156129, Free PMC Article
    2. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
    3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1
    • chaperonin containing TCP1, subunit 6A (zeta 1) pseudogene 1
    • chaperonin containing TCP1, subunit 6A pseudogene

    Clone Names

    • DKFZp779B0634

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003110.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      BC052238
      Related
      ENST00000779530.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      65751105..65763675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      66973233..66985797
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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