U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC00426 long intergenic non-protein coding RNA 426 [ Homo sapiens (human) ]

    Gene ID: 100188949, updated on 17-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC00426provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 426provided by HGNC
    Primary source
    HGNC:HGNC:42761
    See related
    Ensembl:ENSG00000238121 AllianceGenome:HGNC:42761
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 4.1), appendix (RPKM 1.8) and 12 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LINC00426 in Genome Data Viewer
    Location:
    13q12.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30340266..30373914, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29562745..29596390, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (30914403..30948051, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene katanin catalytic subunit A1 like 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5229 Neighboring gene peroxiredoxin 2 pseudogene 1 Neighboring gene uncharacterized LOC124903145 Neighboring gene long intergenic non-protein coding RNA 427 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:30912012-30913211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5230 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5232 Neighboring gene long intergenic non-protein coding RNA 1058 Neighboring gene ubiquitin conjugating enzyme E2 L5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis. Du W, et al. Thorac Cancer, 2020 Jan. PMID 31691516, Free PMC Article
    2. Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge. Li H, et al. Cell Death Dis, 2020 Dec 11. PMID 33311443, Free PMC Article
    3. An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma. Zhu R, et al. Comput Math Methods Med, 2020. PMID 33204302, Free PMC Article
    4. Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants. van der Valk RJ, et al. J Allergy Clin Immunol, 2014 Jul. PMID 24315451, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma.
      Title: An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma.
    2. Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge.
      Title: Linc00426 accelerates lung adenocarcinoma progression by regulating miR-455-5p as a molecular sponge.
    3. Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis.
      Title: Bioinformatics analysis of LINC00426 expression in lung cancer and its correlation with patients' prognosis.
    Submit: New GeneRIF Correction

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.
    EBI GWAS Catalog

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

    Go to the top of the page Help

    Markers

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024464.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356750
      Related
      ENST00000447147.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      30340266..30373914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      29562745..29596390 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials