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    LINC02240 long intergenic non-protein coding RNA 2240 [ Homo sapiens (human) ]

    Gene ID: 101927460, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02240provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2240provided by HGNC
    Primary source
    HGNC:HGNC:53118
    See related
    Ensembl:ENSG00000260192 AllianceGenome:HGNC:53118
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02240 in Genome Data Viewer
    Location:
    5q23.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (125493261..125602227)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (126009206..126118150)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (124828954..124937920)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927421 Neighboring gene VISTA enhancer hs1643 Neighboring gene high mobility group box 1 pseudogene 22 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:124683978-124684543 Neighboring gene NANOG hESC enhancer GRCh37_chr5:124684958-124685473 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124699839-124700406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:124700407-124700973 Neighboring gene VISTA enhancer hs1371 Neighboring gene RN7SK pseudogene 117 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:124747359-124747858 Neighboring gene uncharacterized LOC124901056 Neighboring gene Sharpr-MPRA regulatory region 7820 Neighboring gene MPRA-validated peak5453 silencer Neighboring gene ribosomal protein S3A pseudogene Neighboring gene ribosomal protein SA pseudogene 37

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109887.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116362, BC039471
      Related
      ENST00000564199.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      125493261..125602227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      126009206..126118150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)