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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029878.1 RefSeqGene
- Range
-
5031..10745
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001330070.2 → NP_001316999.1 C-type lectin domain family 10 member A isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AC120057, BM974488
- Consensus CDS
-
CCDS82049.1
- UniProtKB/TrEMBL
-
J3KR22
- Related
- ENSP00000414938.2, ENST00000416562.7
- Conserved Domains (2) summary
-
- cd03590
Location:154 → 278
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- pfam03954
Location:18 → 143
- Lectin_N; Hepatic lectin, N-terminal domain
-
NM_006344.4 → NP_006335.2 C-type lectin domain family 10 member A isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame segment of the coding region, compared to variant 1. It encodes a shorter isoform (2), compared to isoform 1.
- Source sequence(s)
-
BC027858, BC039011, BM974488, D50532, DA620172
- Consensus CDS
-
CCDS45597.1
- UniProtKB/Swiss-Prot
-
Q8IUN9
- Related
- ENSP00000460252.1, ENST00000571664.1
- Conserved Domains (2) summary
-
- cd03590
Location:157 → 281
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- pfam03954
Location:18 → 143
- Lectin_N; Hepatic lectin, N-terminal domain
-
NM_182906.4 → NP_878910.1 C-type lectin domain family 10 member A isoform 1
See identical proteins and their annotated locations for NP_878910.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
BC027858, BC039011, BM974488, DA620172
- Consensus CDS
-
CCDS11087.1
- UniProtKB/Swiss-Prot
- A8K8J8, Q14538, Q6PIW3, Q8IUN9
- Related
- ENSP00000254868.4, ENST00000254868.8
- Conserved Domains (2) summary
-
- cd03590
Location:181 → 305
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- pfam03954
Location:18 → 170
- Lectin_N; Hepatic lectin, N-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
7074537..7080251 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011523615.2 → XP_011521917.1 C-type lectin domain family 10 member A isoform X2
- Conserved Domains (2) summary
-
- cd03590
Location:184 → 304
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- pfam03954
Location:18 → 170
- Lectin_N; Hepatic lectin, N-terminal domain
-
XM_011523613.2 → XP_011521915.1 C-type lectin domain family 10 member A isoform X1
See identical proteins and their annotated locations for XP_011521915.1
- Conserved Domains (2) summary
-
- cd03590
Location:184 → 308
- CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
- pfam03954
Location:18 → 170
- Lectin_N; Hepatic lectin, N-terminal domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
6975209..6980923 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314701.1 → XP_054170676.1 C-type lectin domain family 10 member A isoform X2
-
XM_054314700.1 → XP_054170675.1 C-type lectin domain family 10 member A isoform X1