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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029014.2 RefSeqGene
- Range
-
4205..283653
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001362950.1 → NP_001349879.1 nuclear receptor coactivator 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1713.1
- UniProtKB/TrEMBL
-
A8K1V4
- Conserved Domains (9) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam07469
Location:1149 → 1205
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam09606
Location:974 → 1309
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_001362952.1 → NP_001349881.1 nuclear receptor coactivator 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1713.1
- UniProtKB/TrEMBL
-
A8K1V4
- Related
- ENSP00000385097.1, ENST00000405141.5
- Conserved Domains (9) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam07469
Location:1149 → 1205
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam09606
Location:974 → 1309
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_001362954.1 → NP_001349883.1 nuclear receptor coactivator 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1713.1
- UniProtKB/TrEMBL
-
A8K1V4
- Related
- ENSP00000385195.1, ENST00000407230.5
- Conserved Domains (9) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam07469
Location:1149 → 1205
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam09606
Location:974 → 1309
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_001362955.1 → NP_001349884.1 nuclear receptor coactivator 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1713.1
- UniProtKB/TrEMBL
-
A8K1V4
- Conserved Domains (9) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam07469
Location:1149 → 1205
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam09606
Location:974 → 1309
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_003743.5 → NP_003734.3 nuclear receptor coactivator 1 isoform 1
See identical proteins and their annotated locations for NP_003734.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1), also known as SRC1a, encodes the longest isoform (1).
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1712.1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
- UniProtKB/TrEMBL
-
A8K1V4
- Related
- ENSP00000320940.5, ENST00000348332.8
- Conserved Domains (10) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam09606
Location:961 → 1359
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00989
Location:116 → 173
- PAS; PAS fold
- pfam07469
Location:1212 → 1268
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_147223.3 → NP_671756.1 nuclear receptor coactivator 1 isoform 2
See identical proteins and their annotated locations for NP_671756.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2), also known as SRC1e, contains an additional segment in the coding region compared to variant 1. The resulting isoform (2) contains a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC013459, AC093798
- Consensus CDS
-
CCDS1713.1
- UniProtKB/TrEMBL
-
A8K1V4
- Related
- ENSP00000288599.5, ENST00000288599.9
- Conserved Domains (9) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam07469
Location:1149 → 1205
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam09606
Location:974 → 1309
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
-
NM_147233.2 → NP_671766.1 nuclear receptor coactivator 1 isoform 3
See identical proteins and their annotated locations for NP_671766.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also known as SRC(-Q), uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in a protein (isoform 3) that lacks a single amino acid, compared to isoform 1.
- Source sequence(s)
-
AC013459, AJ000881, BE675986, BF975824, CB047008, U90661
- Consensus CDS
-
CCDS42660.1
- UniProtKB/TrEMBL
-
A8K1V4
- Related
- ENSP00000379197.3, ENST00000395856.3
- Conserved Domains (10) summary
-
- smart00353
Location:32 → 86
- HLH; helix loop helix domain
- cd00130
Location:120 → 213
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam09606
Location:961 → 1359
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- pfam00989
Location:116 → 173
- PAS; PAS fold
- pfam07469
Location:1212 → 1268
- DUF1518; Domain of unknown function (DUF1518)
- pfam08815
Location:924 → 970
- Nuc_rec_co-act; Nuclear receptor coactivator
- pfam08832
Location:632 → 708
- SRC-1; Steroid receptor coactivator
- pfam14598
Location:260 → 370
- PAS_11; PAS domain
- pfam16279
Location:741 → 818
- DUF4927; Domain of unknown function (DUF4927)
- pfam16665
Location:468 → 590
- NCOA_u2; Unstructured region on nuclear receptor coactivator protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000002.12 Reference GRCh38.p14 Primary Assembly
- Range
-
24491254..24770702
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047446155.1 → XP_047302111.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_047446156.1 → XP_047302112.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_047446151.1 → XP_047302107.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_047446157.1 → XP_047302113.1 nuclear receptor coactivator 1 isoform X2
-
XM_047446158.1 → XP_047302114.1 nuclear receptor coactivator 1 isoform X3
-
XM_047446154.1 → XP_047302110.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_047446153.1 → XP_047302109.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_047446152.1 → XP_047302108.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060926.1 Alternate T2T-CHM13v2.0
- Range
-
24525913..24805480
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054344326.1 → XP_054200301.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_054344323.1 → XP_054200298.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_054344325.1 → XP_054200300.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_054344324.1 → XP_054200299.1 nuclear receptor coactivator 1 isoform X1
- UniProtKB/Swiss-Prot
- O00150, O43792, O43793, Q13071, Q13420, Q15788, Q2T9G5, Q53SX3, Q6GVI5, Q7KYV3
-
XM_054344327.1 → XP_054200302.1 nuclear receptor coactivator 1 isoform X3